JASS documentation

Contents:

• What is JASS?
• Installation
  • Installation with pip (recommended)
  • Installation with conda
  • Run JASS as a web application (optional)
  • Public server deployment (optional)
• Data preparation
  • JASS input data
  • Init table generation
  • How to generate input data for JASS
  • Data imputation (optional)
  • Creation of the JASS inittable
• Compute Multi-trait GWAS with JASS
  • The Omnibus tests
  • The SumZ test
  • Access HDFStore components
  • Command Line example
• Compute JASS power gain from the genetic architecture of traits
• Command line reference
  • Positional Arguments
  • Sub-commands
  • Utilities
• Web usage
• Web admin
  • Updating data
  • Deleting data
• Developer documentation
  • API

Indices and tables

• Index

• Module Index

• Search Page